Publications

Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus

2023.

Science Advances. Herb, Brian R.; Glover, Hannah J.; Bhaduri, Aparna; Colantuoni, Carlo; Bale, Tracy L.; Siletti, Kimberly; Hodge, Rebecca; Lein, Ed; Kriegstein, Arnold R.; Doege, Claudia A.; Ament, Seth A. DOI: 10.1126/sciadv.adf6251

The molecular cytoarchitecture of the adult mouse brain

2023.

Nature. Langlieb, Jonah; Sachdev, Nina S.; Balderrama, Karol S.; Nadaf, Naeem M.; Raj, Mukund; Murray, Evan; Webber, James T.; Vanderburg, Charles; Gazestani, Vahid; Tward, Daniel; Mezias, Chris; Li, Xu; Flowers, Katelyn; Cable, Dylan M.; Norton, Tabitha; Mitra, Partha; Chen, Fei; Macosko, Evan Z. DOI: 10.1038/s41586-023-06818-7

Transcriptomic cytoarchitecture reveals principles of human neocortex organization

2023.

Science. Jorstad, Nikolas L.; Close, Jennie; Johansen, Nelson; Yanny, Anna Marie; Barkan, Eliza R.; Travaglini, Kyle J.; Bertagnolli, Darren; Campos, Jazmin; Casper, Tamara; Crichton, Kirsten; Dee, Nick; Ding, Song-Lin; Gelfand, Emily; Goldy, Jeff; Hirschstein, Daniel; Kiick, Katelyn; Kroll, Matthew; Kunst, Michael; Lathia, Kanan; Long, Brian; Martin, Naomi; McMillen, Delissa; Pham, Trangthanh; Rimorin, Christine; Ruiz, Augustin; Shapovalova, Nadiya; Shehata, Soraya; Siletti, Kimberly; Somasundaram, Saroja; Sulc, Josef; Tieu, Michael; Torkelson, Amy; Tung, Herman; Callaway, Edward M.; Hof, Patrick R.; Keene, C. Dirk; Levi, Boaz P.; Linnarsson, Sten; Mitra, Partha P.; Smith, Kimberly; Hodge, Rebecca D.; Bakken, Trygve E.; Lein, Ed S. DOI: 10.1126/science.adf6812

A marmoset brain cell census reveals influence of developmental origin and functional class on neuronal identity

2022.

bioRxiv. Krienen, Fenna M.; Levandowski, Kirsten M.; Zaniewski, Heather; del Rosario, Ricardo C.H.; Schroeder, Margaret E.; Goldman, Melissa; Wienisch, Martin; Lutservitz, Alyssa; Beja-Glasser, Victoria F.; Chen, Cindy; Zhang, Qiangge; Chan, Ken Y.; Li, Katelyn X.; Sharma, Jitendra; McCormack, Dana; Shin, Tay Won; Harrahill, Andrew; Nyase, Eric; Mudhar, Gagandeep; Mauermann, Abigail; Wysoker, Alec; Nemesh, James; Kashin, Seva; Vergara, Josselyn; Chelini, Gabriele; Dimidschstein, Jordane; Berretta, Sabina; Deverman, Benjamin E.; Boyden, Ed; McCarroll, Steven A.; Feng, Guoping. DOI: 10.1101/2022.10.18.512442

A single-cell multi-omic atlas spanning the adult rhesus macaque brain

2022.

bioRxiv. Chiou, Kenneth L.; Huang, Xingfan; Bohlen, Martin O.; Tremblay, Sébastien; O’Day, Diana R.; Spurrell, Cailyn H.; Gogate, Aishwarya A.; Zintel, Trisha M.; Cayo Biobank Research Unit; Andrews, Madeline G.; Martínez, Melween I.; Starita, Lea M.; Montague, Michael J.; Platt, Michael L.; Shendure, Jay; Snyder-Mackler, Noah. DOI: 10.1101/2022.09.30.510346

Cell-type-specific population dynamics of diverse reward computations

2022.

Cell. Sylwestrak, Emily L.; Jo, YoungJu; Vesuna, Sam; Wang, Xiao; Holcomb, Blake; Tien, Rebecca H.; Kim, Doo Kyung; Fenno, Lief; Ramakrishnan, Charu; Allen, William E.; Chen, Ritchie; Shenoy, Krishna V.; Sussillo, David; Deisseroth, Karl. DOI: 10.1016/j.cell.2022.08.019

Make war not love: The neural substrate underlying a state-dependent switch in female social behavior

2022.

Neuron. Liu, Mengyu; Kim, Dong-Wook; Zeng, Hongkui; Anderson, David J. PMID: 34982958; DOI: 10.1016/j.neuron.2021.12.002

Molecular and cellular evolution of the primate dorsolateral prefrontal cortex

2022.

Science. Ma, Shaojie; Skarica, Mario; Li, Qian; Xu, Chuan; Risgaard, Ryan D.; Tebbenkamp, Andrew T. N.; Mato-Blanco, Xoel; Kovner, Rothem; Krsnik, Željka; de Martin, Xabier; Luria, Victor; Martí-Pérez, Xavier; Liang, Dan; Karger, Amir; Schmidt, Danielle K.; Gomez-Sanchez, Zachary; Qi, Cai; Gobeske, Kevin T.; Pochareddy, Sirisha; Debnath, Ashwin; Hottman, Cade J.; Spurrier, Joshua; Teo, Leon; Boghdadi, Anthony G.; Homman-Ludiye, Jihane; Ely, John J.; Daadi, Etienne W.; Mi, Da; Daadi, Marcel; Marín, Oscar; Hof, Patrick R.; Rasin, Mladen-Roko; Bourne, James; Sherwood, Chet C.; Santpere, Gabriel; Girgenti, Matthew J.; Strittmatter, Stephen M.; Sousa, André M. M.; Sestan, Nenad. PMID: 36007006; DOI: 10.1126/science.abo7257

Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

2022.

Cell Genomics. Luo, Chongyuan; Liu, Hanqing; Xie, Fangming; Armand, Ethan J.; Siletti, Kimberly; Bakken, Trygve E.; Fang, Rongxin; Doyle, Wayne I.; Stuart, Tim; Hodge, Rebecca D.; Hu, Lijuan; Wang, Bang-An; Zhang, Zhuzhu; Preissl, Sebastian; Lee, Dong-Sung; Zhou, Jingtian; Niu, Sheng-Yong; Castanon, Rosa; Bartlett, Anna; Rivkin, Angeline; Wang, Xinxin; Lucero, Jacinta; Nery, Joseph R.; Davis, David A.; Mash, Deborah C.; Satija, Rahul; Dixon, Jesse R.; Linnarsson, Sten; Lein, Ed; Behrens, M. Margarita; Ren, Bing; Mukamel, Eran A.; Ecker, Joseph R. PMID: 35419551; DOI: 10.1016/j.xgen.2022.100107

Single-cell analysis of prenatal and postnatal human cortical development

2022.

bioRxiv. Velmeshev, Dmitry; Perez, Yonatan; Yan, Zihan; Valencia, Jonathan E.; Castaneda-Castellanos, David R.; Wang, Li; Schirmer, Lucas; Mayer, Simone; Wick, Brittney; Wang, Shaohui; Nowakowski, Tomasz Jan; Paredes, Mercedes; Huang, Eric J; Kriegstein, Arnold R. DOI: 10.1101/2022.10.24.513555