Publications

Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans

2021.

eLife. Bakken, Trygve E; van Velthoven, Cindy TJ; Menon, Vilas; Hodge, Rebecca D; Yao, Zizhen; Nguyen, Thuc Nghi; Graybuck, Lucas T; Horwitz, Gregory D; Bertagnolli, Darren; Goldy, Jeff; Yanny, Anna Marie; Garren, Emma; Parry, Sheana; Casper, Tamara; Shehata, Soraya I; Barkan, Eliza R; Szafer, Aaron; Levi, Boaz P; Dee, Nick; Smith, Kimberly A; Sunkin, Susan M; Bernard, Amy; Phillips, John; Hawrylycz, Michael J; Koch, Christof; Murphy, Gabe J; Lein, Ed; Zeng, Hongkui; Tasic, Bosiljka. PMID: 34473054; DOI: 10.7554/elife.64875

Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia

2021.

Nature Neuroscience. Eze, Ugomma C.; Bhaduri, Aparna; Haeussler, Maximilian; Nowakowski, Tomasz J.; Kriegstein, Arnold R. PMID: 33723434; DOI: 10.1038/s41593-020-00794-1

Single-cell epigenomics reveals mechanisms of human cortical development

2021.

Nature. Ziffra, Ryan S.; Kim, Chang N.; Ross, Jayden M.; Wilfert, Amy; Turner, Tychele N.; Haeussler, Maximilian; Casella, Alex M.; Przytycki, Pawel F.; Keough, Kathleen C.; Shin, David; Bogdanoff, Derek; Kreimer, Anat; Pollard, Katherine S.; Ament, Seth A.; Eichler, Evan E.; Ahituv, Nadav; Nowakowski, Tomasz J. PMID: 34616060; DOI: 10.1038/s41586-021-03209-8

Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus

2021.

bioRxiv. Herb, Brian R.; Glover, Hannah J.; Bhaduri, Aparna; Colantuoni, Carlo; Bale, Tracy L.; Siletti, Kimberly; Linnarsson, Sten; Hodge, Rebecca; Lein, Ed; Kriegstein, Arnold R.; Doege, Claudia A.; Ament, Seth A. DOI: 10.1101/2021.07.20.453090

Cell-type-specific 3D epigenomes in the developing human cortex

2020.

Nature. Song, Michael; Pebworth, Mark-Phillip; Yang, Xiaoyu; Abnousi, Armen; Fan, Changxu; Wen, Jia; Rosen, Jonathan D.; Choudhary, Mayank N. K.; Cui, Xiekui; Jones, Ian R.; Bergenholtz, Seth; Eze, Ugomma C.; Juric, Ivan; Li, Bingkun; Maliskova, Lenka; Lee, Jerry; Liu, Weifang; Pollen, Alex A.; Li, Yun; Wang, Ting; Hu, Ming; Kriegstein, Arnold R.; Shen, Yin. PMID: 33057195; DOI: 10.1038/s41586-020-2825-4

Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis

2020.

Cell Reports. Ding, Song-Lin; Yao, Zizhen; Hirokawa, Karla E.; Nguyen, Thuc Nghi; Graybuck, Lucas T.; Fong, Olivia; Bohn, Phillip; Ngo, Kiet; Smith, Kimberly A.; Koch, Christof; Phillips, John W.; Lein, Ed S.; Harris, Julie A.; Tasic, Bosiljka; Zeng, Hongkui. PMID: 32433957; DOI: 10.1016/j.celrep.2020.107648

Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells

2020.

Cell. Gouwens, Nathan W.; Sorensen, Staci A.; Baftizadeh, Fahimeh; Budzillo, Agata; Lee, Brian R.; Jarsky, Tim; Alfiler, Lauren; Baker, Katherine; Barkan, Eliza; Berry, Kyla; Bertagnolli, Darren; Bickley, Kris; Bomben, Jasmine; Braun, Thomas; Brouner, Krissy; Casper, Tamara; Crichton, Kirsten; Daigle, Tanya L.; Dalley, Rachel; de Frates, Rebecca A.; Dee, Nick; Desta, Tsega; Lee, Samuel Dingman; Dotson, Nadezhda; Egdorf, Tom; Ellingwood, Lauren; Enstrom, Rachel; Esposito, Luke; Farrell, Colin; Feng, David; Fong, Olivia; Gala, Rohan; Gamlin, Clare; Gary, Amanda; Glandon, Alexandra; Goldy, Jeff; Gorham, Melissa; Graybuck, Lucas; Gu, Hong; Hadley, Kristen; Hawrylycz, Michael J.; Henry, Alex M.; Hill, DiJon; Hupp, Madie; Kebede, Sara; Kim, Tae Kyung; Kim, Lisa; Kroll, Matthew; Lee, Changkyu; Link, Katherine E.; Mallory, Matthew; Mann, Rusty; Maxwell, Michelle; McGraw, Medea; McMillen, Delissa; Mukora, Alice; Ng, Lindsay; Ng, Lydia; Ngo, Kiet; Nicovich, Philip R.; Oldre, Aaron; Park, Daniel; Peng, Hanchuan; Penn, Osnat; Pham, Thanh; Pom, Alice; Popović, Zoran; Potekhina, Lydia; Rajanbabu, Ramkumar; Ransford, Shea; Reid, David; Rimorin, Christine; Robertson, Miranda; Ronellenfitch, Kara; Ruiz, Augustin; Sandman, David; Smith, Kimberly; Sulc, Josef; Sunkin, Susan M.; Szafer, Aaron; Tieu, Michael; Torkelson, Amy; Trinh, Jessica; Tung, Herman; Wakeman, Wayne; Ward, Katelyn; Williams, Grace; Zhou, Zhi; Ting, Jonathan T.; Arkhipov, Anton; Sümbül, Uygar; Lein, Ed S.; Koch, Christof; Yao, Zizhen; Tasic, Bosiljka; Berg, Jim; Murphy, Gabe J.; Zeng, Hongkui. PMID: 33186530; DOI: 10.1016/j.cell.2020.09.057

Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior

2019.

Cell. Kim, Dong-Wook; Yao, Zizhen; Graybuck, Lucas T.; Kim, Tae Kyung; Nguyen, Thuc Nghi; Smith, Kimberly A.; Fong, Olivia; Yi, Lynn; Koulena, Noushin; Pierson, Nico; Shah, Sheel; Lo, Liching; Pool, Allan-Hermann; Oka, Yuki; Pachter, Lior; Cai, Long; Tasic, Bosiljka; Zeng, Hongkui; Anderson, David J. PMID: 31626771; DOI: 10.1016/j.cell.2019.09.020